abricateABRicate performs mass screening of assembled contigs for antimicrobial resistance (AMR) and virulence genes using multiple curated sequence databases.Versions

v1.2.0 (default)

Tags: AMR detection, virulence, cpgParameters

input_contigs (file, multiple) required: One or more contig/genome files to screen with ABRicate.

db (enum) required: Select which ABRicate database to use for gene detection. Options: ecoh, bacmet2, ncbi, victors, vfdb, megares, card, plasmidfinder and 3 more

Links

Home page

Documentation

GitHub repository

License: GPL-2.0

Cite as: Seemann T. ABRicate. https://github.com/tseemann/abricate

Open abricate in the CPG Portal. Configuring and running a tool needs JavaScript.