Salmonella TypingCreated by the Microbiological Diagnostic Unit Public Health Laboratory to automate in-silico serotyping of Salmonella enterica genome assemblies. After upstream QC and species confirmation, it harnesses the SISTR algorithm—combining curated O- and H-antigen BLAST searches with a 330-locus cgMLST distance scan against >50 k reference genomes—to generate serovar calls that conform to the Kauffmann-White scheme, then filters them with MDU-specific business logic for routine public-health useVersions

v0.2.0 (default)

Tags: serotyping, Salmonella, cpgParameters

contigs (file, multiple) required: Input contigs

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Open Salmonella Typing in the CPG Portal. Configuring and running a tool needs JavaScript.