KleborateKleborate is a genomic surveillance tool for Klebsiella pneumoniae species complex and related bacteria. It performs MLST typing, virulence locus detection, antimicrobial resistance gene identification, and capsule (K) and O antigen locus typing from assembled genome sequences.Versions

v3.2.4 (default)

Tags: bioinformatics, genomic surveillance, AMR detection, MLST, KlebsiellaParameters

contigs (file, multiple) required: Input assembled genome contigs in FASTA format.

preset (enum) required: Preset modules to run. Options: kpsc, kosc, escherichia

Links

License: GPL-3.0

Cite as: Lam MMC, Wick RR, Watts SC, et al. A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex. Nature Communications 12, 4188 (2021). https://doi.org/10.1038/s41467-021-24448-3

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