KaptivePredict bacterial surface polysaccharide loci and antigen types from assembled genomes. Supports Klebsiella pneumoniae and Klebsiella oxytoca species complexes, Acinetobacter baumannii, and Escherichia coli group 2/3 capsule loci. Select the database matching the organism and locus of interest.Versions

v3.3.2 (default)

Tags: bioinformatics, in silico serotyping, capsule typing, O antigen typing, Klebsiella, AcinetobacterParameters

assemblies (file, multiple) required: One or more bacterial genome assemblies in nucleotide FASTA format. Each file represents one genome.

database (enum) required: kpsc_k / kpsc_o: K. pneumoniae species complex K / O loci; kosc_k / kosc_o: K. oxytoca species complex K / O loci; ab_k / ab_o: A. baumannii K / outer-core loci; ecoli_kps: E. coli group 2 and 3 capsule loci. Options: kpsc_k, kpsc_o, kosc_k, kosc_o, ab_k, ab_o, ecoli_kps

Links

License: GPL-3.0-or-later

Cite as: Stanton TD, Hetland MAK, Löhr IH, Holt KE, Wyres KL. (2025). Fast and accurate in silico antigen typing with Kaptive 3. *Microbial Genomics* 11(6), 001428. https://doi.org/10.1099/mgen.0.001428

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