ECTyperECTyper (from phac-nml/ecoli_serotyping) performs in silico Escherichia coli O- and H-serotyping from assembled FASTA genomes.Versions

v2.0.0 (default)

Tags: Escherichia coli, serotypingParameters

assemblies (file, multiple) required: Input assembled E. coli genome FASTA file(s).

Links

License: Apache-2.0

Cite as: Bessonov K, Laing C, Robertson J, et al. ECTyper: in silico Escherichia coli serotype and species prediction from whole-genome sequence data. Microbial Genomics. 2021;7(12):000728. doi:10.1099/mgen.0.000728

Open ECTyper in the CPG Portal. Configuring and running a tool needs JavaScript.