CheckM2CheckM2 rapidly predicts microbial genome bin quality using machine learning, estimating completeness and contamination for metagenome-assembled genomes, single-amplified genomes, and isolate genomes across bacterial and archaeal lineages.Versions

v1.1.0 (default)

Tags: bioinformatics, MAG quality, genome quality, metagenomics, machine learningParameters

assemblies (file, multiple) required: Input genome bin FASTA files.

Links

License: GPL-3.0

Cite as: Chklovski, A., Parks, D.H., Woodcroft, B.J. et al. CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning. Nat Methods 20, 1203–1212 (2023). https://doi.org/10.1038/s41592-023-01940-w

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